Sökning: "amplicon sequencing"

Visar resultat 1 - 5 av 11 uppsatser innehållade orden amplicon sequencing.

  1. 1. Molecular detection of Sclerotinia sclerotiorum from petals of oilseed rape by Nanopore sequencing using MinIon

    Magister-uppsats, Högskolan i Skövde/Institutionen för biovetenskap

    Författare :Sohunda Abela; [2023]
    Nyckelord :;

    Sammanfattning : Sclerotinia sclerotiorum is a plant pathogenic fungus that causes Sclerotinia stem rot in oilseed rape. In Sweden, the disease causes severe crop loss that varies by year. LÄS MER

  3. 2. Epidemiology and genotyping of Methicillin-resistant Staphylococcus aureus with amplicon-based Nanopore-sequencing : Creating a panel of clinically relevant genes

    Kandidat-uppsats, Uppsala universitet/Institutionen för medicinsk cellbiologi

    Författare :Max Koivistoinen Jonsson; [2023]
    Nyckelord :Amplicon-sequencing; Genomic typing; MRSA; MSSA; MinION;

    Sammanfattning : Methicillin-resistant Staphylococcus aureus (MRSA) is a variant of the more common Methicillin-Susceptible Staphylococcus aureus (MSSA), an opportunistic pathogen a portion of the human population carries as normal bacterial flora. When an outbreak of MRSA occurs, it is often important to determine if and how these strains are related to each other. LÄS MER

  4. 3. Microbial diversity in Swedish breeds of sheep analysed by amplicon based sequencing

    Master-uppsats, SLU/Dept. of Anatomy, Physiology and Biochemistry

    Författare :Farzana Nazir; [2023]
    Nyckelord :Ruminants; Microbiome; NGS; Bioinformatics; Statistical Analysis; Metagenomics; Data Analysis;

    Sammanfattning : The gastrointestinal tract (GIT) of ruminants have divergent type of microbiome provides favourable environment for their growth. In many species, these microbiome considered as important source of assessing animal health & welfare. LÄS MER

  5. 4. Beyond the Bubbles : a Study of Fungal Diversity and Gushing in Beer Production

    Master-uppsats, SLU/Dept. of Forest Mycology and Plant Pathology

    Författare :Alexander Pettersson; [2023]
    Nyckelord :Fusarium Head Blight; Fungal communities; Metabarcoding; Amplicon sequencing Malting barley; Gushing; Pink kernels; Random forests;

    Sammanfattning : Gushing, violent and spontaneous over-foaming of beer, is a well-known quality reducing phenomenon encountered in the brewing industry. The present study investigated the impact of fungal contamination in barley grains, specifically focusing on gushing and the occurrence of pink kernels. LÄS MER

  7. 5. Analyses of microbial community in nutrient solution with biofertilizer and risk assessment of establishment of pathogens

    Master-uppsats, Lunds universitet/Teknisk mikrobiologi

    Författare :Julia Södergren; [2020]
    Nyckelord :Biofertilizer; hydroponic; 16S rRNa sequencing; challenge testing; calorimetry; applied microbiology; teknisk mikrobiologi; Agriculture and Food Sciences; Technology and Engineering;

    Sammanfattning : The societal interest for a more sustainable and circular food production is increasing. Hydroponic farming is an alternative way of growing vegetables that can bring farming into urban environments, reducing long transports of food. In parallel, the focus in waste treatment is being more directed toward resource recovery. LÄS MER