Sökning: "Gillespie algorithm"

Hittade 4 uppsatser innehållade orden Gillespie algorithm.

1. 1. DNA damage – a novel method to measure the rate of single-stranded breaks from fragmenting dsDNA in nanochannels – theory and modeling

   Master-uppsats, Lunds universitet/Fysiska institutionen; Lunds universitet/Beräkningsbiologi och biologisk fysik - Genomgår omorganisation

   Författare :Magnus Brander; [2020]
   Nyckelord :biophysics; DNA damage; single-stranded breaks; double-stranded breaks; Bayesian inference; Brownian motion; Gillespie algorithm; photosensitized DNA damage; Physics and Astronomy;

   Sammanfattning : Damage to DNA can cause death to an individual cell and serious harm to the host organism. Photosensitized reactions are one cause of DNA damage. It can lead to destructive chemical reactions targeted to a base of the DNA as well as a breakage along one or both of the DNA strands. LÄS MER

3. 2. A Monte Carlo study of the particle mobility in crowded nearly one-dimensional systems.

   Uppsats för yrkesexamina på avancerad nivå, Umeå universitet/Institutionen för fysik

   Författare :Ahlberg Sebastian; [2014]
   Nyckelord :Molecular crowding; Gillespie s algorithm; Random walk; Nearly 1D-model; Particle diffusion;

   Sammanfattning : The study of crowding effects on particle diffusion is a large subject with implications in many scientific areas. The studies span from pure theoretical calculations to experiments actually measuring the movement of proteins diffusing in a cell. LÄS MER

4. 3. Accuracy aspects of the reaction-diffusion master equation on unstructured meshes

   Uppsats för yrkesexamina på avancerad nivå, Avdelningen för teknisk databehandling

   Författare :Emil Kieri; [2011]
   Nyckelord :master equation; Gillespie algorithm; unstructured mesh; diffusion; maximum principle;

   Sammanfattning : The reaction-diffusion master equation (RDME) is a stochastic model for spatially heterogeneous chemical systems. Stochastic models have proved to be useful for problems from molecular biology since copy numbers of participating chemical species often are small, which gives a stochastic behaviour. LÄS MER

5. 4. Delay-dependent Stability of Genetic Regulatory Networks

   Uppsats för yrkesexamina på avancerad nivå, Lunds universitet/Institutionen för reglerteknik

   Författare :Johan Ugander; [2008]
   Nyckelord :Technology and Engineering;

   Sammanfattning : Genetic regulatory networks are biochemical reaction systems, consisting of a network of interacting genes and associated proteins. The dynamics of genetic regulatory networks contain many complex facets that require careful consideration during the modeling process. LÄS MER